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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1001270 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29318 |
| Total Scaffold Genes | 33 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (15.15%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009377 | Metagenome | 318 | Y |
| F035571 | Metagenome | 171 | Y |
| F038008 | Metagenome | 166 | Y |
| F064254 | Metagenome | 128 | Y |
| F070710 | Metagenome | 122 | Y |
| F102180 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_10012701 | F102180 | N/A | MMIAIRINXELNKRLRESTLVITHNEELKELIARMKHLVDVVTKNRECHEKIYKVYSDSQTSLKTVKAMISTKDQTHLQXV |
| Ga0272420_100127010 | F035571 | N/A | MYISIFNISMLTLLNTFATXCRVXFCKVSSLHFLSDSFFFLSRXCQIDASNAISDLITVEYTCLTFVKIVSHVKTFKXLSASILVTXLTSIYXRCTSYHSVMFSXIFKTCTSDFDLIIKLSIYMLVIMSNFLNFLVKCVSSYFSDANVMSXIQAHFMQTSYILLSVLQISSMNLS |
| Ga0272420_10012702 | F064254 | N/A | MQELYESVSSLFSLSFIXLFNDVTAXNXFNMLVESIIXMIVVTALMISKSFLKFVMFSSHCIAFHSTFHLKHVNKMCLINIQSLLHLHIVVTTLNIHLSCRNXLKSIFLMHSCVNNTLXNFTXFLYSHKCQCIIFDVEYXKXATLNLSFQTILHVYLIYFCMSINLVITSMHXCSVNYRNKLCASSIILFITSFSSTFACLIIQCNFSMTS |
| Ga0272420_100127020 | F009377 | N/A | MTRSTESESVSIACYELXNAKRKSLLSQNXTASEEEDTNASLNTEEKNMNMLFFDHKMIKISISTELNAXINIHEADDLIVFIKYICQQHDIEIKIHNDMIQMLNDVNKINIKLKATQTTLNAVQMHLQKEMKKKSIIIHHLEVTSSRLSTLISKDRFSKSIKLSDSSLFEDSRQNVNNXLSXMXNKLKMNKNHFSIEEIKFAYVKSXVSETMIKHIAFRMRNTITNSFLEAEEILSIINKMYNNFN |
| Ga0272420_100127027 | F038008 | N/A | MKXNHLYMMTFXSKSLRIVIVVNKKMSINQHCFNTFALKQRVYSNDSNSRENVMMIAMRINXELNKRLKELTLIITHHEELKELIARVKHLADVVTKNXECHEKIYKVYSDSQTFLKTVKVMISTKDQTRLQXVQIMHENI |
| Ga0272420_100127030 | F038008 | N/A | MKXSHFYMMIFXSESSKIVIVENKKMSINQHCFNTFTLKQRVYLNDSNSRKNVMMIVMRINXELNKRLRKSTLVITHHEELKELIVRMKHLADIVTENRKCHEKIYKVYNDNQTSLKTVKAMISTKNQTCLQXVQIAHESIQF |
| Ga0272420_10012706 | F070710 | N/A | MTKQFFLXILQYNIRKLLKIQESFLINREVRKFDIVIIQKQECNINDLQSFSSAHNFFHLVKNSSSQSRTCIYVNKYLRLNQXTVETAESDIYSIKILTCNTDDKMQMLRLLNIYNLNSLFITFTERLSTISRLNELLKNDYE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |