Basic Information | |
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Taxon OID | 3300030517 Open in IMG/M |
Scaffold ID | Ga0272420_1001314 Open in IMG/M |
Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 28547 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (22.22%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Victoria Land | |||||||
Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F009580 | Metagenome | 315 | Y |
F035571 | Metagenome | 171 | Y |
F061399 | Metagenome | 131 | Y |
F086376 | Metagenome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0272420_100131413 | F086376 | AGAAG | VSIARYELQNARRESLLSQNXTASEEEDMNVSLNTEEKNTNALLFDHKIIKISINTELNAXINTHEANDIVVFIKYICQQHDIKIEIHNDMIQMLEDVNKINITLKITQMRLQKENKDKNVIIHYLETASSRQSTLISEDHFSKSIKLLNSSLFEDSTQNVNNXLSXMQNKLKTNKNHFSIEELKIAYIES |
Ga0272420_100131419 | F035571 | N/A | MILFCSMFKXTCSELMYISVFKVSMFTLLNASATXCKVXFXSVSNLHSLFNNLSFLSCXCQTDALNAISDLTTVEYTCFTFVKIAFHVKTSRXLSISILVTXFVFICXKCMFHYSFMFSYISRTCTSDFNLITEFSIYMLVIMLNLFDFLMKCVSLYFSDANVVSXMQAHFAQMLYALLSVLQISSMNLS |
Ga0272420_10013142 | F061399 | N/A | MNITYKYILIFVDHFIKMRHLILITSMKVEEVINCFYAHVXKHHNLLKFFISDXDTQFIFNVXKHMCKMLKINVKLLMIYYFEIDNQIERINAVMKHYFQVFINYMQNDXVKXLSEVEFIINNASSLITLTSFFLINLSQNSRLNFEFSESLLENLTFQAQNKLINVEEFIKKMKKLTEHLHDEMFIVQIIYKFYVNFFCCSCFKYFIENEVXLNVCNLSIAHLIIKLNDHNFDFFKIKHVFKNNSLIIELNFLTFMKIFSIFHVILLNHIASDFLSSQRQKSXKLIVIKNDKRFXYVNSILNFKYDRCYNSSLLKYYIDXKNHFFTXKFFHLLNNCE |
Ga0272420_10013145 | F061399 | N/A | MSITYKYVLVFINHFIKMRHLVLITSMKVEEVINCFYAYVXKHHDLLKFFVSDHDIQFIFNIXKHMCKMLKIDVKLSTMYHSEINDQIKKINAVMKHYFQVFINYMQNDXVKXFSEVKFVINNASSLITLTSFFLINLSQNSHLDFKFSEFLLKNLTSQAXNKLINVKEFIRKMKKLTEHLQNEMLITQIIYKFNVNLFHHSYFKYFIEDEVXLNACNFSIIRFIIKLNDHNVDFFKIKHVFKNNLLIIELNLSTFMKIHSIFHVTFLNHITSDFLLNQHQKF |
Ga0272420_10013148 | F009580 | AGCAG | MIEVRMKRLRLVDKMICIQIFERDLAQKLDFSRRQRDFFIYTDDVTVVDVHDTQSEELLIXAFFSDFVRMLQLAVVAQLSLVADFLDFRNDQSLILNDDNEKA |
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