NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272420_1001314

Scaffold Ga0272420_1001314


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1001314 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28547
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (22.22%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009580Metagenome315Y
F035571Metagenome171Y
F061399Metagenome131Y
F086376Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100131413F086376AGAAGVSIARYELQNARRESLLSQNXTASEEEDMNVSLNTEEKNTNALLFDHKIIKISINTELNAXINTHEANDIVVFIKYICQQHDIKIEIHNDMIQMLEDVNKINITLKITQMRLQKENKDKNVIIHYLETASSRQSTLISEDHFSKSIKLLNSSLFEDSTQNVNNXLSXMQNKLKTNKNHFSIEELKIAYIES
Ga0272420_100131419F035571N/AMILFCSMFKXTCSELMYISVFKVSMFTLLNASATXCKVXFXSVSNLHSLFNNLSFLSCXCQTDALNAISDLTTVEYTCFTFVKIAFHVKTSRXLSISILVTXFVFICXKCMFHYSFMFSYISRTCTSDFNLITEFSIYMLVIMLNLFDFLMKCVSLYFSDANVVSXMQAHFAQMLYALLSVLQISSMNLS
Ga0272420_10013142F061399N/AMNITYKYILIFVDHFIKMRHLILITSMKVEEVINCFYAHVXKHHNLLKFFISDXDTQFIFNVXKHMCKMLKINVKLLMIYYFEIDNQIERINAVMKHYFQVFINYMQNDXVKXLSEVEFIINNASSLITLTSFFLINLSQNSRLNFEFSESLLENLTFQAQNKLINVEEFIKKMKKLTEHLHDEMFIVQIIYKFYVNFFCCSCFKYFIENEVXLNVCNLSIAHLIIKLNDHNFDFFKIKHVFKNNSLIIELNFLTFMKIFSIFHVILLNHIASDFLSSQRQKSXKLIVIKNDKRFXYVNSILNFKYDRCYNSSLLKYYIDXKNHFFTXKFFHLLNNCE
Ga0272420_10013145F061399N/AMSITYKYVLVFINHFIKMRHLVLITSMKVEEVINCFYAYVXKHHDLLKFFVSDHDIQFIFNIXKHMCKMLKIDVKLSTMYHSEINDQIKKINAVMKHYFQVFINYMQNDXVKXFSEVKFVINNASSLITLTSFFLINLSQNSHLDFKFSEFLLKNLTSQAXNKLINVKEFIRKMKKLTEHLQNEMLITQIIYKFNVNLFHHSYFKYFIEDEVXLNACNFSIIRFIIKLNDHNVDFFKIKHVFKNNLLIIELNLSTFMKIHSIFHVTFLNHITSDFLLNQHQKF
Ga0272420_10013148F009580AGCAGMIEVRMKRLRLVDKMICIQIFERDLAQKLDFSRRQRDFFIYTDDVTVVDVHDTQSEELLIXAFFSDFVRMLQLAVVAQLSLVADFLDFRNDQSLILNDDNEKA

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.