NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1001328

Scaffold Ga0272420_1001328


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1001328 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28384
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (12.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009580Metagenome315Y
F021026Metagenome220Y
F023763Metagenome208Y
F086377Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100132822F023763N/AMLILMSRIEYILLFKKIFXATCQSIQLIIDLVEMISDVIVESRQKLTSTSLMMTQLLNXHEILKIFVIRDHLNRIDKVFKLXSLFLENSNNDYEFFIVDLVVTLNXVILLQKVSDXMKNLIFIILKENVFEHIVXSIDFYYNLVIXIIMMKNNLESENFLKSVECNLTFLKSDKEYIFSDEMNERDNYSTIVINESSIKVREI
Ga0272420_100132824F086377N/AMIQRFXDQRQKILILNCDSVQISIIHAEVKFFFEFLDEENRDDRLKATDLNEIFAQIFIQITTKF
Ga0272420_100132827F021026N/AMIVFCILRQAQSKVFTLALIDSEVFAYVFMNKFFMQQHHLFLHQSTHSHRLQEFDDQVALINDIIHVVEITMILNKHIEKLFFYVIELSQYFIIMSLSXLHHHVIDVNFKHNILILSFFFCLNHYYSFFIKIYDLNQQEENFSFKVNKVAFFQSCSQFTHKKQLSSXITHKKQFSLQIIHKKQFSLQIAHKKQFNLQIIHKK
Ga0272420_100132828F009580N/AMIEVKVKILRLVDKMICIQISERDLAQRLNFSCEQXDFFIYIDDVIVVNVHDMQSEELFIXAFFNNFAXMLQLAVVAQLSLVANFLDLRNDQSLILNDDNDEA
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