NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1001414

Scaffold Ga0272420_1001414


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1001414 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26920
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (14.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008115Metagenome338Y
F033266Metagenome177Y
F040408Metagenome161Y
F075494Metagenome118Y
F086375Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100141418F086375N/AMFTLFVNSKSIASXNRDENXFNEIKEHYKRQNNDHVIIFKXLYKLRQFNVXKEVNEIDKAMMKDNIRDEIEQERKNKDIHDNAS
Ga0272420_100141425F033266N/AMSRHSLTEECFEEFQNRFSQISDADSLKLRMKSSSAASFIHEDDKSFIEMIIFLMFYEIXKAQSLVLDEETDQLYELNKQQEDEIKELKTRLQAKEITSSDFIYSERSRSQKISDSSLFTDEKNST
Ga0272420_10014144F008115N/AMNFITELLLSEDYNVICTIICXLIKKHHYVFCHXEDDDISVEETVXIMLXNVYXLHDLSSSIVLNRDFQFISIMXQSFCKRLKITASLLTAYHSEIDDQSKRANQDVERRLRIYCNYMQNDXAKXLSMIEFSENFNIFSIILMTSFYFNKNFHSXISFDSNTINYETIHERLEVRKANDIVIQMKELLIFNHQQLKKTKQIIEAQINKHKRDVIYEVDDXIXLFFRNIKTTRSCKNLKDKQLEFYQITVKVEIFYHLRLLISMKQLHLMFSSKLLHSYFDDFLSEQHSESFRFLTIEDDKHXEIDDILNSRXYXDXIQYKIKXTRLDQNDEXYYVDKEEFKNLKEVLVEFHKLYSNKLH
Ga0272420_10014146F040408N/AMYDYKSIFDIHIENDAIKEEVSAAKEHIEMLQDVQNTLTQXX
Ga0272420_10014147F075494GAGMFIHNVSEQKYSAKHVKSKSQDEIYCTXVINEVEKMFAHSINENTSMCSAMHVKSMLLRIMILAVQETHLNQVHFLKDRISQFKSTTSRSTNVETSIHKDCNVTEKQLNSVAETVNCKQLVSHAIVEVLTIHETTYNFSSKFIVELIKIL
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