NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272420_1001610

Scaffold Ga0272420_1001610


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1001610 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24202
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (16.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021216Metagenome219Y
F035571Metagenome171Y
F064254Metagenome128Y
F075493Metagenome118Y
F102180Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100161010F064254N/AMQELYESVSSLFLLSFIXFFDDVTAXNXFNMLIESIIXMIIIAALMISKSFLKFMMFSFHCIAFHSTFHLKHVNRMCLINIXSLLHSYVVIIILSTRLSCRNXLKSIFLMYSCINNALXNFAXFLCSYRCQCIISDVRYXKXAALNLSFQITLHVYLIYFCMSISLVITSVCXCSVSNKDKLYALLIILFITLFSSTSACLVT
Ga0272420_100161017F102180GAGMMTAIKINXKLNKRLKELTLIITHHEKLKELIAKMIHFTDVMTENQECHEKIYKVYNDNQTSLKTVKAMISTKDQTRLQQVQIIHESI
Ga0272420_100161020F021216N/AMKSRMKSNAMRKKHHELEKALRNHECSNDDHLNDTFNEHTESISSCDIIKELNEREKK
Ga0272420_10016104F035571GAGMTXITFVKRTCINLHACLIFCIRSSTQLCSMILFCNMFKXTYNELVYVSVFKVSMLTLLNASATXCKVXFXSVFNLHSLFNSSSFLSRXCQIDALNAISDLIIVEYTCLAFVKRASHVKTSKXLSVSILVMXFIFICRRCASHYSFMFSCIFRICTSDFNLITELSIYMLVIMSNLFNFLVKCVSSYFSDANVTSXVQAHFAQTSCALLSVLQISSVNLS
Ga0272420_10016107F075493N/AMQSVXAMHEYMLRHLITLFAVTLQAIHVXNVFKVQISIQIYAFNSDVHCKNAFCFSKIIMHLYHLIAQMQSLCXDCIDVCNAFFVLFSSLISLIFVILCYYDAIACXNHYEEESALFAFQLYLRIFLNENIQKYYFLDDE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.