NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1001705

Scaffold Ga0272420_1001705


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1001705 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23145
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010214Metagenome306Y
F021216Metagenome219Y
F104134Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10017053F021216N/AMKSRMKSNAMRRKHHELKKALRNHECNDDDHLNDILNEHTESISSCDIIEESDERKKE
Ga0272420_10017055F010214N/AMXCLSKLLMKVSVLFDYDTSSLLCSSLTIFYIIMFRFDFQFEDERRFLCIHDAHDCNICRAVFSYSMIVIHXAEKYVMKERCTXXENKVXLYXITLFFSXFDLCHVDVEXIVSINVQSQSFDVXLXLIKKNVF
Ga0272420_10017058F104134N/AMIRSLXSVNTSAILCKICSINFFCIFFISLLFIILIMIFHFLQSNDRLSLSHYSFIAISSLVMFAHDVIFVKKCMLFCVCNCLLNSXTDVFSFCTFFAMITFXFTLCFSSELSXSHXISFNAISFHEXSLLFFFSNVDIFISKSIMLTMFFSSLREHFNLASLFLCNESMSLAIIFESTLLXFMQFIIVQSSSKFTLSYL
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