NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1001883

Scaffold Ga0272420_1001883


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1001883 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21602
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021216Metagenome219Y
F040408Metagenome161Y
F075493Metagenome118Y
F094622Metagenome105Y
F100079Metagenome102Y
F104135Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100188311F094622N/AMSISQHHLDTFALKQRVYLNDSNSRKNVTMIAMRINXELNKRLRKSTLIITHHEKLKELIVRVKHLADVAIKNQKCHEKIYKVYSDSQTFLKTVKVIISTKD
Ga0272420_100188313F021216N/AMKSRTKSNATRREHHELEKALKNHERSNNDHSNDILNEHTESILSCDIIEELDEREKK
Ga0272420_100188315F104135N/AVTQQYVNASQRSNQMIXTFAAHLSILKHQLSLYSDEHKRTHLFIKLRSELRVIITNVQSISITXDALIDLVAQLKTNLRKEHILLSKXSXDENLHDQDRVNKKTHLKQKKSHXLIRLNFSSKTSSHASSCYSKNLFNIMCYMCNQKNHYFTDCKDEKIKNRLKESDANRVFIDSMSHMSHFKISRKDKLLMNASNHQEKNKKFSL
Ga0272420_10018833F075493N/AMQSVQAMHEYMLRYLMTSFIVASXTIHVXNVSRVQISIQIYAFDFDMHCKNAFCFLKIITHLYYHLIAQMQSLCXDCIDICNAFSVLFSSLISLIFVILRYCNVIACXNHCEEENASSASXLYLCIFLNEDIQKYYFLDDE
Ga0272420_10018837F040408N/AMYDYELIFDIYIKNDAIKEKVSTTKKYVEMLQDMXNILTQX
Ga0272420_10018838F100079N/AMFKHKHFIQEXYADEKTLLKEKKYKRINKEXLNYAVXLKV
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