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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1001909 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 21322 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (36.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008735 | Metagenome | 328 | Y |
| F009580 | Metagenome | 315 | Y |
| F038009 | Metagenome | 166 | Y |
| F094624 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_100190913 | F038009 | GAG | MIKASSFQLNYVKLYKRLIELICLKNNKSFKEERILTLDFXXIFFLNDLKNTTRNFLFQTRDKIEXDLFLVNELSISXLFVSKREVILLLVSRXETELLLASELRTELLLVSKLKTELLLSSKXKTRLLLANELKTELLLSSEXETKLLLASKLSAKLLLVSNL |
| Ga0272420_100190914 | F009580 | AGCAG | MIEVRMKRLRLVDKMIYIQIFERDLAQRLNFSYEQXDFFIYTDDVIVVDVHDTQSKEFLIXAFFNDFTQMLQFAVVAQLSLVADFLDLRNDQSLILNDDNDKT |
| Ga0272420_100190916 | F008735 | N/A | VNLLIYDESXLNIDDLDLMKEIMIIVHVHALYQTLLSCIQSIFVSLILKYVEKLLESRSDEDSDRVCKKINDEERLIVQDLCDDLSYHHKKLRIQFYINXRTENDEXRXNDNIMLSNLILKLLHYAKDLNXIFDYTLSELFNSMLIID |
| Ga0272420_10019099 | F094624 | N/A | LKINIKLSTTYHFEIDDQIKKVNAVMKHYLRVFVNYMQNDXTKXLSEVKFIVNNTSLLITLASFFLINLSQNSRLDFKFFESLLKNLTSQAXDKLINVKEFIRKMKKLTEHLYDEMFIAQIIYEFNVNLFHRSCFKYFVENEVXLNACNLSITCLAVKLNDHNVDLFKIKRVFKNNSLIIKLNLSAFMKIHSIFHIILLSHIASDFLSS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |