NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1002013

Scaffold Ga0272420_1002013


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1002013 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20520
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (28.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae → Lecanorales → Lecanorineae → Parmeliaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009377Metagenome318Y
F009580Metagenome315Y
F023763Metagenome208Y
F061399Metagenome131Y
F086375Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100201310F023763N/AMMIQLLNXHEILKIFMIRDHLNRIDKVFKLXSSFLESMNNDHKFFIVDLIVTLDXVMLLQKVSDXMKNLILIILKENIFEHIVQSINFYHNLVIXIIMMKNNFKSENFLKNVECNLTFLKSDKEYIFSDKMSERSSYFTIIINESFIKVREI
Ga0272420_100201319F086375N/AMFTLFVNSKSIASRNRGENWFNEINEHYKRQNNDHVIIFKXLHKLRQFNVLKEVNEIDKAAMKDNVRDEIEQERKNKDIHDNASQ
Ga0272420_100201323F009580GAGMICIQISECNLTQRLNFSYEQQDFFIYTDDITVVNVHDMQSKKLFIXAFFNNFTQMLQFAVVAQLSLIADFLDLRNDQSLILNDDNNKV
Ga0272420_10020135F009377N/AMTRSTESESVSIACYKLQNARKESLLSQNXTASEEEDMNASLNTEEENMNTLLFDHKMIKISISTELNAXISAHEADDLVVFIKYICQQHDIEIEIHNDMIQMLNDVNKINIELKAINIKLKVTQIMLNAVXTCLQKEMKKKNVIIHYLEATSSQLSTSISKDXFLRLIKLSDSLLFEDSRQNVNNXLFQMQNKLKMNKNHFSIEEMKIAYVKSXVSETTIKHIAFRMKDMITNSFLEVKKILLIINKMYDDLNQHHTT
Ga0272420_10020139F061399N/AMNYVNSLSLNIFMSIIYKYVLIFVDHFIKMKHLVLTTFMKVEEVINYFYAHVXKYHNLLKFFISDXDTQFIFNVXKHMCKMLKINVKLSMMYHFEIDDQIKRVNAVMKHYFQVFVNYMQNDXVKXLSKVEFVINNTSSLITLTSFFLINLSQNSCLNFESFESLFKNLMFQAXDKLINVKKFIKKMKKLTKHLRDEMLIAQIIYEFNVNLSCRSCFKYFIEDEVXLNACNLSIAHLAVKLDDYNVDFFKIKRVFENNFLIIKLDFSTFMKIHSVFHVTLLNYITSDFLLNQRQKSQELIVIKNDKRFXYVNS
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