NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1002038

Scaffold Ga0272420_1002038


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1002038 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20358
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (34.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F019260Metagenome230Y
F086377Metagenome110Y
F089602Metagenome108Y
F104132Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100203810F104132AGAAGMNEILNSRVKNSQLEYLIKXTEIEENSXVKFANVMNVIEVMNVYHAXNFDCSSKNSXITYVQESSDSEYESEN
Ga0272420_100203813F089602N/AMKNEXLSFIKILSEENNNLSEIIDIMLQTVNQXEIFHQRIFFLLIKKIVIVNKAIHVLLQNFTKI
Ga0272420_100203819F086377N/AMIQHFXNQRQRISILDCDSIQILIIHTKAKFFFEFLDKKNKDDHLKVIDLNEIFAQIFIQITSKF
Ga0272420_100203823F001253GAGGVTFIKDAMKDVLISSTTSSSDDFFALKSLTIECVLSSNEISYSLKSLIDTEAADYLFIDELIAQNVCDHLQIESLSLIKFKPIRKFDDHYAKKLITHAIYLNLTVQDHMKRFVSMLITRLDQHQMILEKTXMNKIEMTIDMRD
Ga0272420_10020385F019260N/AMIQELKSMSRINIKSEKYLNSELYIEERENKLNQFIFELISKLKLNVNRYSTLESRLLCEYSRLSKNAVAQALSCMTAQHDKLVTIEQLVVLLRQAFDDSDKQEIAQRFISALRMRNRIFIEYLFDFQQHIDAIEYDVVTRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSXYRVTVQNLFKSKAVIHSVSVISTVLAYLVKYATSSTGSKAMISSSRDLMNLSIINMKKRDSLILEKHQHRMINHLCLYCDKSEHQTAICNSKLKIQLQVVSLFALAISIDNLAFDTSFALRKV
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