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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1002265 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 18833 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (16.67%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F008735 | Metagenome | 328 | Y |
| F009580 | Metagenome | 315 | Y |
| F020121 | Metagenome | 225 | Y |
| F021026 | Metagenome | 220 | Y |
| F048018 | Metagenome | 148 | Y |
| F094625 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_100226512 | F048018 | N/A | MTLSXVSXMIXRHSLSELSIYFLSXKYRXFSCFSHLTKEILLXCRASLQSTSIIXAANLSLILTYFYNVXVRMSAESSSRFRVFXFSXNLTFSTLNSSISKFMKARICKSAEITKNRCNXIESRMMICDXSFMTLMSKMSRVRFSTILKSKT |
| Ga0272420_100226514 | F020121 | GAG | MKRLIEHLRDEMLIAQIIYKFNVNLSCCSCFKYFIEDEVXLNVHNLNIAHLIIKLNDHNVDLFKIKRVFKNNSLIIELNLSAFMKIHSIFHVILLNHIASNSLSSQRQKFXKFIVIKNDERFXYVNSILNFKHDKCYNSSLLKYYIDXENHFFIXESFHLLNNCEQTLNEYHLVNSVVEESHVLSCVMSQSQCQEL |
| Ga0272420_100226519 | F001951 | N/A | MIIIKLKFIDSLRNKRERNEDIVETTVTEMMIFKLKELLVDAETFLTLMNKIMMKMK |
| Ga0272420_100226520 | F094625 | N/A | MIKNSVEIFHVMQKLQNQVQQYDVITSFSFIVFNSSIYIKLNSQSFMIIVQIITQILNNQSFLIIHLSVNFVTIIITSRFKKLLNIFKYKRNKDQLNAXKQSLIQCMNMNNDHYFFHXVKIIYVESXFIINKKIYNLMN |
| Ga0272420_10022655 | F008735 | N/A | MREIMIIVHIHALYQTLLSYIQLIFIFFIFKYVKKLLEFKSNENSDRVRREMNDEERLIVQDLCNDLRYYHKRLRIQFYINXRIENDEXEXNDDIMLLNLILKLMHYVKDLNXIFDHTLSKLFNSTLIVDQEIVKXLHLSKRIIKXDFNIXKYCRKCRSFIMSKTELN |
| Ga0272420_10022657 | F009580 | GAG | MIYIQIFERNLTQKLNFFYKQRDFFIYTDDITVINVHDMQSEKIFIXAFFSNFAXMLQLAVVAQLSLVADFLDLKNDQSLIXNNDNDEI |
| Ga0272420_10022658 | F021026 | N/A | MIVFCILRQAQFKVLTLALIDNEVFTYVFMNKFFTQQHHFLLHQLTYSCRLQEFNDQVALINDIIHVIEITMILDEHIEKLFFYIIELSQYLIIMNLSXLHHHVIDVNFKHNILILSFFFCFNHYCSFFIKIYDLNQQEENFSFKVNKVAFSQSHSQFTHKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |