NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1002361

Scaffold Ga0272420_1002361


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1002361 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18215
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (22.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F009580Metagenome315Y
F038009Metagenome166Y
F070712Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100236122F070712GAGMSDIKEKKFLNKVRKQVIFAEKXDLLNLYRKIEVTTLVDHSKSRDAILTNVKNINLQAEICFICHKSDHTSKECSDQTSRINALEDDKFDQSTLNSESDFDSKN
Ga0272420_10023613F001951N/AMMKFRFIDSLKDEKERDEDTVETTVTKMMIFELKELLVNAEMLLTLINETMMNTKRD
Ga0272420_10023614F009580GAGMICIQISECNLAQRLDFFCKQRDFFIYTDDVTVVDIHDTQNEEFLIXTFFSDFAQMLQLAIVAQLSLIADFLDLRNDQSLILNDDNDEV
Ga0272420_10023618F038009N/AMSSMIKALNFQLNYVKLYKRLIELICLRNNRSSKEKRILTLDFXXVFFLNDLKNTTKSFLFQTRDKTERSLFLVNELSISXLLVSERRVILLLVSRRKTELLLASELRTELLLVSELKTELLLSSEXETKLLLASKLSAELLLVSNL
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