NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1002421

Scaffold Ga0272420_1002421


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1002421 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17895
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009580Metagenome315Y
F019260Metagenome230Y
F086377Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100242117F019260N/AMSQFENISNTLSSTSLVSINELITVAQFRTHVNNAFEAXYTFLIELQTXFNDIITQYINXVSVCQQEHEQTQIELKQSQINNEILSEMIQELKSMSRIDIKSEKYSNSELYIKERENKLNQFIFELISKLKLNVNHYSTFEFRLLYEYSRLSRNAVAQALSRMTAQHDKLVTIEQLVVLLRQAFDDSDKQEIAQRFISVLRMQNRIFIEYLFDFQQHIDAIEYDVVTQKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQKLNSRYRVTVQNLLKSKAVIHSVSVISTVFAYLFKYATFLTGLKATISSSRNLMNLSIVNMKKRDSLTFKKHQHRMINHLCLYFDKSEHQTAICNSKLKIQLRIVSLFTFAISIDNLTFNTSFVLKKV
Ga0272420_10024212F009580N/AMKRLRLVDKIICIQISERDLTQKLNFSCEQQDFFIYIDNIIVVNVHDMQSEELLIXAFFNDFARMLQFAVVAQLSLVADFLDLRNDQSLILNDDNDEA
Ga0272420_10024215F086377N/AMIQRFXDQKQRILILDCNNVQISIVHAEVKFFFKFLDEENRDDHLRATDSNKIFAQIFIQITTKF
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