NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272420_1002443

Scaffold Ga0272420_1002443


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1002443 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17798
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (26.32%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F057011Metagenome136Y
F091080Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10024434F091080N/AMIILCXFKQVINKDIISFLCSYIMINVYRAYVINFQSKISSYDXIDLNFNSDIDXILKCSHSSDIKNSSMKVMSVTSVFIRVRNLNIFFKLLKMTSTMNNLKSNESSDMLMKQNMSILFSVTTLMKTDHFSNLQQFHALKSFXNIHMLYILSSCIXSKVLSLITLSCXNQDSIFXVSFTQRLITXIKQMKC
Ga0272420_10024435F002432N/AMQNDXAKXLSMIEFSENFNIFSIISMTSFYFNKSFHLRINFDSDTTDYETIHERLEARKANHIIIXMKELLIFDHQQLKNMKQIIKAQINKHRXDVIYKVDDXVXLFSRNIKTTRSCKNLKDKQLEFYQITVKVDIFYHLRLLISMKQLHSMFSLKLLHSYFSYFLSEQHSESFKSFTIEDDEHXKINDILNFKXYXDXIQYKIKXTRLNRNDEXYYVDKEEFENLKEVLVEFHKLYSDKSH
Ga0272420_10024438F057011N/AVLXSNFENQCIRKXRVXSIYIELXVKFXFKKLIISFRIIEEIEIIFLCSQIEVLLKENYFEKSFLINAFLISQSNSFSLRSLIDNDFIVYTLIHDKLVDKVCQKLEIQSILLAKEKLIREYDEKLARKTIIHKILFNLTIESHKKLTMSMLIADIEHHEAILSKFXMNKNEILLNMRHDTIVFSDQLNISISIFSISSNMKHLSXSRSTLTSSVTHSNASKILKCSVLIIQKESFSIQNINIISF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.