NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1002515

Scaffold Ga0272420_1002515


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1002515 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17428
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009580Metagenome315Y
F021026Metagenome220Y
F023763Metagenome208Y
F038008Metagenome166Y
F074202Metagenome119Y
F089602Metagenome108Y
F100079Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100251512F100079N/AMFRYRHSIHEQYVDEKTSLKEKKYKRVSKEXLNYVVXLKV
Ga0272420_100251514F038008N/AMKRSHFYMMIFXSKSLRVVIVANKKMSINQHCLDTFALKQRVYLNDSNSRENVMMIAMRINXKLNKRLRELTLVITHHEELKELIARAKHLADVATKNQKYHEKIYKVYNNSQTSLKTMKAMISTKNQTRLQQVQIIHESIXS
Ga0272420_100251516F074202N/AMKIVDCKMNCKMNCKTIYISFLLMSSCLLCSDNAFNLALFLNDNFFLKLVISKLHLHVETELNFKEEIILCCSFFITKNDDLDSSFNLKIATNFIKFLXFAIFYNDXSSFFNLFLSIKCDVTRLKXANVENXAFESEVVVNLAVLNNLDNVNSSKFKNLDCKDVMKRLTSIESSFFSFDIIN
Ga0272420_10025152F089602N/AMKDEXLNFIEISSEENDDLSEIIDITLQTVNQQEIFHQKTFFLLIKEIVVIDKAIYVLLQSFTKI
Ga0272420_10025154F009580N/AMIEVRVKRLRLVDKMICIQIFERDLAQRLDFFHEQQDFFIYTDDVTVVDVHDMQSEEFLIXAFFSDFAXMLQLAVVAQLSLVADFLDFKNDQNLILNDDNNKA
Ga0272420_10025155F021026N/AMNKFFAQQHYLLLHQLIHSRRLQEFDDQVALINDITHVVEITMILDEHIERLFFYVIELSQYLIIMNLSXLHHHVIDVNFEHNILILSFFFCLSHYCSFLIKIYDLNQQEENFSFKVNKVTFSQSCLQFTYKKQFSSXIAHKKHFSLQIAHKK
Ga0272420_10025158F023763N/AMLILMSRIECILLFKEIFXMTCQSIQLIIDLVEMISDVIVKSRQKLTSMSLMMTQLLSXHEILKIFVIHDHLDKIDKVFKLXSSFLESVNNDHEFFIIDLVVTLDXVMLLXKVSDXTKNLILIILRENVFEHIVQSIDFYHNFVIXIIRMKNNLKSEDFLKSVECNLTFLKSDKEYIFSDETSERSSYSTIVIDESFIEVREI
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