NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1002528

Scaffold Ga0272420_1002528


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1002528 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17368
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.26%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F017941Metagenome237Y
F019260Metagenome230Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100252815F019260N/AMSQFENISNTLSSTSLVSINELITVAQFRIHVNNAFEAXYTFLIELQTXFNDIIIQYINXISVCQQEHEQTQIELKQSQINNETLSKMIQELKSISRINIKSEKYSNSELYIKERENKLNQFIFELISKLKLNVNHYSTFESRLLYEYSRLSKNAVAQALSRMTAQHDKLVTIEQLVVLLRQVFNDSDKQEIAQRFISALRMRNHIFIEYLFDFQQHIDAIEYDVVTRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRITVQNLSKSKAVIHSVSVISTVLAYLVKYATSSAGSKATISSSRDLMNLSIVNMKKRDSLIFEKHQHRMINHLCLYCDKSEHQTAICNSKFKIQLXVVSLFTFAISIDNLAFDTSLVLKKV
Ga0272420_100252816F003820N/AMTDKSFNVFYFSFMKLFSYFDYDDCILMNDLQNKINNRLQNALSICSENFTSLLRLKKFLQDVNNKQRVNYQLRSEHHTVIVKVTVVSDKRITLSSVLSILIINYVKSIISFIFESVRLSIICYICKASNHLFKNCFQNKMNISTSXAFTSRLHEIIISKNKKNEKISSFENSEAKN
Ga0272420_100252817F000597N/AMKDVLISSMMSMSDDSFASKSFTTECVLSSNEISYSLKSLMNIEAADYSFIDEVIAQIVCDQLQIKSLTLIKVKSIQEFNDHYAKKLITHVIYLNLMIQGHTTDIAFMLITRLNQHQMILEKPEXTKSI
Ga0272420_10025282F003820N/AMKLFNYLNYDDCILMNDLQNKINNRLQNTLSVCSENFTSLSRLKKFLQDVNNKQQVNYQLRSERCTVIIKVSVVSDKCTTSLSVMISIINYVKSIISFIFESARSSIICYICKISSHLFKNCSQNKINTLTFQAFIFHLHEIIISKNK
Ga0272420_10025286F017941N/AMKIADLKKNISKLIYKQILEINRIDENCTLLHEAIAKDETQYEDIKLKNCHV
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