NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1002576

Scaffold Ga0272420_1002576


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1002576 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17078
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (41.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009580Metagenome315Y
F021026Metagenome220Y
F102181Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100257614F021026N/AMIVFCILRQAQSRVLALALIDSEVFAYVFMNKFFAQQHHLFLHQLTHSRRLRQFDDQVTLIDDIIHVVEITMILDEHIERLFFYVIELSQYFIVMNLSXLRRHVIDVNFEHNILILSFFFCLNHCCQILVKIYDLNQQEENFSLEVNKVAFLQPRSQFAHKKQLSSRIAHKKQFSLQIAHKKQFVTILATHLRX
Ga0272420_100257615F009580AGCAGMIEVRVRRLRLVDKMICIQISERDLAQRLDFSRRQRDFFIYTDDVTVVDVHDTQSEELLIXTFFSDFARMLQLAVVAQLSLVADFLDLRNDQSLILNDDNDEA
Ga0272420_100257617F102181N/AMREVTIIVHVHALYQTLLSCIQSIFVFLILRYVEKLLESRSDDDSDRIRREMNDERRLIVQDLCD
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