NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272420_1002838

Scaffold Ga0272420_1002838


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1002838 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15847
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F008735Metagenome328Y
F021026Metagenome220Y
F094624Metagenome105Y
F096306Metagenome104Y
F102179Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100283811F021026N/ALKLFEFNSTFKDSHMIVFYILRQAQSRVFILALIDNEVFAYVFMNKFFAQQHYLLLHQLTHSCRLQEFNDQVTLINDIIYVVEITMILNKHIKRLFFYITELSQYLVIMNLSXLCHHVIDVNFEHNILILSFFFCLNYCCSFLVKIYDLN
Ga0272420_100283812F001951N/AMTMTKFRFIDSLKDGKEKDKDTVETTVTEMMIFEFKELLVDAKMLLTLMNETMMKMK
Ga0272420_100283813F008735N/AVSFLIYDESXLNIDDLDSIKEIMIIVCVHTLYQTLLSCIQLIFVSLIFRYVEKLLESKSDEDSDKVCREMNDKKRLIVQDLCNSLNYHHERLRIQLYIDXRTENDEQRXSDNIMLSNLILKLLHYTKDLNXIFDHTLSKLFNSTLIIDXEIVRXLYLSERVTKRDFNIXKRCRKCRSFIVSETELD
Ga0272420_10028386F096306N/ALNTLSSLCDIRAMFVMYDNYAVDSLIIDDDSNKERSCKDNSKLHASMILFNIATLIATNVKIIFVESNDK
Ga0272420_10028387F102179N/AMSVHSISENMSTCSAMHIRSMLLKIMILAVQETHLDKVHFLKDKISQFESTTSRSTDIETLIHRDHNVAEKQLNSVAETVDCKQLISCAIVRVLTIHETIYNFSSKFIVELIKILQCQRL
Ga0272420_10028388F094624N/ALKIDVKLSMMYHFEIDDQIKRVNAVMKHYLQVFVNYMQNNXVKXLSEVKFIINNTLSSITLASLFLINLNQNSRLDFKSFESLFKNLTSQAXDKLINVKEFIKKMKKLTEHLRDEMLIAHIIYEFNVNLSCRSCSKYFIEDEVXLNACNLSIAHLTVKLNDHNVDFFKIKHVFKNNSLIIKLNLSAFMKIHSIFHVILLNHIASDFLSS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.