NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1003079

Scaffold Ga0272420_1003079


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1003079 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14868
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010214Metagenome306Y
F058565Metagenome134Y
F086375Metagenome110Y
F100079Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10030791F086375N/AMFTLFVNSKFIISQNHDENXFNEIKEHYKXQNNDHVILFKXLHKFKFFNVXKEVNEINKAAMKDNVKDEIKQEHKNKDIYDNAY
Ga0272420_100307911F100079N/AMFRHKHFIHKXYADEKFLLREEKHKRVNKEXLNYVVXLKM
Ga0272420_10030796F058565N/AMNHSNADLKMIASDVDLSQENKDAKLKCSRNNKKNVANIIDLLIKISTLEKEKNKDHL
Ga0272420_10030797F010214N/AMXRSSKLLIKVSVLFNYDTSSLLCSSLTIFYTMMFRFNSXFKDERCFLCILDACDYNVYRAVFFYSMIVIHXAEKYVMKERCTXXEDLVXLYXVTLFFSXFDLCHVDVERIVSINVQSQSFNVXLXSMKKNAFXSFSXALDFSCE
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Institute for Fundamental Biomedical Research
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