NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1003292

Scaffold Ga0272420_1003292


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1003292 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14015
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008598Metagenome330Y
F034417Metagenome174Y
F058564Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100329211F008598GGAMAYLYADNSLGDTIPAHVTLTTDRVTADAAGPLADALHAAGVAVERHTFLPVRDEEQHPSGVLLLATDGPPLSLAQFVVPASAPPGVASALAAVLGVGGGERATLATLQLKADGVFVSIRGQDIRDITHALDALPAHLARLDTRREERRLVYAEGTWRIDP
Ga0272420_100329216F034417AGGAGGMPWAVTKPRSAWLAQATDAWTALAPQAPDGAQLRALAAIDHDNFARLIEALAALTPGEVSQELQDLAGLRPVGEILGMLDRGDVDDAGDIEDW
Ga0272420_100329217F058564AGGAGMTPIGYAMIGHPLCLPCVDGDYRRDPDGTIYAHNGRAIGDDVAPIHARDPDDGAPCAGCGLPLAAALEAAVVWTCPECGSADLRAFYSERRTCHVGARDDTGDPADAAPWPTYENDEFVDIDPALFAFACDACTAHDITPCTKEGGTHALGRDQAA
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