NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1003687

Scaffold Ga0272420_1003687


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1003687 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12877
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038009Metagenome166Y
F040408Metagenome161Y
F050043Metagenome145Y
F055319Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10036871F040408N/AMYDYESIFDIHIKNDAMKEEVSAAKERVEMLQDVQNTLM
Ga0272420_10036874F050043N/AMIQIYSKFVKSNYIMIKIXSXLKKDEVEENEKLRKTERAINKSTIIIHSCLCFIVSTTSFTXKINNVYVLFTHHNYCHLHQLHIIYTIYNVIYTHYNXRXIVIXSKVSLFLVFSQRFKDFYQELLEXINECTSSFIKVNKDINYXDQEXTYLEEKTIVMMNXHIEIRSKTRIRDXVEDQIXVSFETLXLCQDIV
Ga0272420_10036875F038009N/AMIKASSFQLDYVKLYKRSIKLICLKNNKNFKEERILTLDFXXVFFLNDLKNTIRSFLFQMKDKIERNLFLVNELSINXLLMSERRVILLLISRXETELLLASELRTELLLVSELKTELLLSSEXEIKLLLASKLNAELLLVSNL
Ga0272420_10036879F055319AGCAGMIEVRVKRLKLVDKMICIQISERDLAQRLNFSCEQXNFFIYIDDVIVVDVYDTYXYMKVRANMYM
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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