NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1003980

Scaffold Ga0272420_1003980


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1003980 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12244
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F038009Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100398012F038009GAGMIKALSFQLNYVKLYKRLIQLICLKNNRSSREKRILTLDFXXVFFLNDLKNTTRSFLFQTRDKTERDLFLVNELNNSXLLVSEREVILLLVSRRKTELLLASELRTELLLVSELKTELLLSSELRTRLLLASELKTELLLSSEXETKLLFASKLSAELLLVNDL
Ga0272420_100398015F008735N/AVNLLIYNESXLDIDDLDSMREVAIIVYVHALYQTLLSDIQSIFVSFIFKYVEKLFKSNENRDNDRVCREVNDKRRLIVQDLCNDLRYHCKKLRIQFYINXRTENNEXKXNNDIMLSNLILKLLHCAKDLDXIFDHTLSELFNSTLIINQKIVRXLHLSKRITRXDFNVXKRCRKCRSFIMSKIKLN
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