NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1004234

Scaffold Ga0272420_1004234


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1004234 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11712
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F005901Metagenome386Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10042345F000597N/AMKDVLISSTMSMSDDSFASESLTIECVLSSNEISYSLKSLINIEAADYSFFDEVIAQIVCDQLQIKSLTLIKAKSIREFDDHYAKKLITYVIYSNLTI
Ga0272420_10042346F005901AGAAGMNDKLIVNVDQFNDEIICIVYMMFRLEDDAAKHIFTXRCFDSSNSFTSIYELFDHLKEIYDELNKNRKSRHEYNALRQADKSFNVFYFNFMKLFSYLDYDDCTLMNDLQNKINNRLQNTLSICSENFTSLFRLKKFLQDVNNKQRVNYQLRSKRCTVIVKVTVVSDKCATLLSVMTSIINYVKSIIFSTSESDXAKSCIICYICKISNHLFKNCSQNKINTSTS
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