NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1004564

Scaffold Ga0272420_1004564


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1004564 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11141
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009580Metagenome315Y
F021026Metagenome220Y
F038008Metagenome166Y
F038009Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10045643F038008N/AMKXSHFYIMIFXSKLSRVVIVANKKISISQHHLDTFTLKQKVYLNNSDSRKNVTTTAMKTNXELNKRLRELTLVITHHEELKELITRMKHFADVVTKNRKYHEKIYKVYSDSQTFLKTVKVMISTKNQTCLQXVQITHESIXFQEVMLKLH
Ga0272420_10045647F009580AGCAGMIEVRVKRLRLVDKIICIQIFERNLVQKLKFSCRQQDFFIYTDNITVINVHDMQSEELFIXAFFSDFAXMLQLAVVAQLSLVADFLNFRNDQSLILNDDNDEA
Ga0272420_10045648F021026N/ALKLFEFNSTFKDSHMIVFCILRQAQSKVFTFALIDSEVFAYVFMNKFFTQQHHFLLHQLIHSCRLREFDDQVTLINDITYVVEITMILDEHIEKLFFYVTELSQYLIIMNLSXLHHHVINVNFEHNILILSFFFCLNHCC
Ga0272420_10045649F038009AGCAGLNFQLNYVKLYKRLIELICLKDNRSSKEKRISTLDFXXVFFLNDLKNMIKSFLFQTRDKTEXSLFLVNKLNISXLLISKRRVILLFVSKRETELLLVSELKTELLLVSELKTELLLSSKXETRLLLASELKTELLLSSEXETKLLLASKLSAELLLVSNL
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