NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1005291

Scaffold Ga0272420_1005291


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1005291 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10186
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F005901Metagenome386Y
F087980Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100529110F005901N/AMLSRLEDDAAEHIYARCHHDSSHSYYLIYELFEHLKEIYDEVNKNXKYRREYNALRQADKFFNVFYFDFIKLFSYLKYDDCTLMNDLQNKINNRLQNALSVCLKDFTLLHXLKIFLQNVNSKQRVNYQLRSERCTVIIKVTVISDKCATTFLSALMTLIIDYVKSIIFSISESDRAKSSIICYICKTSSHLFKNCSQNKINISASXTFTSRLHEIIISKDKKNEKMSSFENNEAKN
Ga0272420_10052912F087980N/AMKSSHNFSIDDERAVEQFAQSMIENSVEIFRAMQELQNQVXQHDIIISFSFIIFNSLIYIKLNSQFLAMITQIVTQILNNQSFFIIHLFANSVAVFITSKFEKLFDIFKY
Ga0272420_10052914F001951N/AMTKLRFIDSLKDEREKDENIVETTVTKVMIFEVKKLLVDAKMLLTLMNKTMMKTKKDXXCLNC
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