NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1005687

Scaffold Ga0272420_1005687


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1005687 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9705
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003820Metagenome466Y
F013598Metagenome269Y
F024448Metagenome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10056873F013598N/AMNFIINLFDSSEYNIILMIICKLSKERHYISRIIDDEDITVEKTAEMLIQ
Ga0272420_10056877F024448N/AMKDVLISSTMSMSNDSFASEYLTIEYVLSSNEISYSLKSLIDIEAADYFFINEVIAQIVCNQLQIESLTLIKAKSIRKFNDHYAKKFIIHIIYSNLTVQDHMIDTASMLITXLYQHQMILEKTXMNKINLVIDMQINSLRFSNFNSTSQKSITLLSSNKLITKRKSLTSTHILKRSFTFVTSQFSQNKKFIE
Ga0272420_10056878F003820N/AMKLFSYLDYDDCILMNDLQNKINNRLQNTLLVCSENFTSLLRLKKFLQDVNNKQRVNYQLCSKRCTIIVKVTVILDKCITFLSAVTTLIINYVKSIISSISESAKSSIICYICKTSNHLFKNCSQNKINTLTSXAFISRLHEIIISKNKENEKISFKNSEAKN
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