NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1005710

Scaffold Ga0272420_1005710


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1005710 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9682
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F008735Metagenome328Y
F023763Metagenome208Y
F087979Metagenome109Y
F094624Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10057102F087979N/AMKEKNESSTSIYMNXAESRLNNSSIDLRLQKFMHMTEIIETELLKLN
Ga0272420_10057103F094624N/AMMYHSEINDQIKRINVIMKHYLQIFVNYMQNDXVKXLSEVEFIINNTSSSITLTSFFLINLSQNSRLNFKFFESLLENFTFQAXNKLINVEEFIKKMKKLTEHLHDEMFIAQIIYKFNVNLFHHSCSKYFIEDEVXLNACNLSITHFIVKLNDHNVDLFKIKRVFKNNSLIIELNLSTFIKIHLIFHVILLNHITSDFLSSQHQKS
Ga0272420_10057105F023763N/AMSFQNCLMLILISRIKCISLFKEIFXVTCQSIQLIVDLVKMISDVIVEFRQKPTSMSLMITQLLSXHEILKIFMIRDHLNRIDKVFKLXSSFLESANNDHEFFIVDLVITLDXVMLLXKVSDXMKNFILIILRKNVFKHIVQSINFYHNLVIXIIVTKNNLESEDFLKNVECNLTFLRSDKEYIFSDEMNERDSYSTIVINESFIEVREI
Ga0272420_10057107F001951N/AMMIMMKLKFIDSSRNKKEKDEDTVVTTVTEMMIFKFKELLIDAEMLLTLTNKMMMKKKXD
Ga0272420_10057109F008735N/AMKEIMIIIHVHALYQTLLSCIQLIFVFLIFKYVEKLLESKSDDDSDRISKKMNDERRLIIQDLCNNLSYHCKRLRIQFYINXRIKNDEQEQNDNIMLLNLILKLLHCAKDLDXIFDHTLSELFNSMLIIDXEIVR
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