NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1006129

Scaffold Ga0272420_1006129


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1006129 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9284
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F008735Metagenome328Y
F009580Metagenome315Y
F074204Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10061293F074204N/AMIVFCILHQAQSRVLALALIDSEVSTYVFINKFFTQQHHLFLHQLTHSRRLQEFNDQVALIDNITYVIEITMILDEHIKKLFFYVIELSQYLIIMSLS
Ga0272420_10061294F009580GAGMICIQISEHDLAQRLNFSHRQQDFFIYIDDIIIVNVHDMQSEELLIGAFFSDFAXMLQFAIVAQLSLIANFLDFRNNQNLILNDDNDEV
Ga0272420_10061295F001951N/AMTMTKFRFIDSSRNEKERNEDTVKTTVTEVMIFELKELLINAEMLLTLMNEMMMKMK
Ga0272420_10061296F008735N/AVSLLIYDESXLDINDLDSMREIMIIVHIHTLYQTLLSFIQLIFVSLILKYVKKLLESKSNEDSNKIRRRMNDKRRLIVQDLCDDLSYHHERLRIQFYINXRIENDEXKXDDNIMLLNLILKLTHYAKDLDXIFDHTLSELFNSTLIIDQEIVRXLYLSERVTRXDFNV
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