NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1006701

Scaffold Ga0272420_1006701


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1006701 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8779
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008598Metagenome330Y
F034417Metagenome174Y
F042663Metagenome157Y
F058564Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100670112F008598AGGMVDRYATDTPAHVTLTTDQITTDAAGLLTDALHAAGVTVEQHVFLPVRGEEQHPSGVLLLATDGPPLPLARLVVPATAPVGVTEALAAVLGVGGVGRAAPATLQLKADGVFVSLRGRDLRDITHALAALSAPLARLDTRRGERRLVYNDGTWRIDP
Ga0272420_10067013F042663AGGAMTTQIMPAPHIAASIPSIPPRVAVALYDCDVSVTTTFRPLDSLGSTEVVASLALPDDAALLNLLDATITRLTAYRDAYQQAITEDADPAPVRAPLPLPVPWYAW
Ga0272420_10067015F058564AGGAMTTKPALPSPAPAGRENAVADSAAGVAPIPASAPDDGVPRVSGGQPLAALPEADIVWTCPDCGSTALRVFYSERRVCQVGTYADGPNDPAPWPSYTGDELVDIDPGTFAFACDACNTHDITPCQKGGTNALGCDQAA
Ga0272420_10067016F034417AGGAGGMPWAVTKPRSAWLAQATDAWAALEPHAPQGAQRRDLAAIDHDTVALLIEALAALTPGQVSQERQDLAGLRPVGEVLGMPDRGDTRLDIGDAGDW
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