NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272420_1008454

Scaffold Ga0272420_1008454


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1008454 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7591
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023762Metagenome208Y
F041515Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10084543F041515AGGAGMGMNQMIVLETRQDDPQEAQDAPQPSPLNAAPTTLFEVIDRAVSAVLAQFDRWCDRDEREGEDEAHFEDYVRWRVAIIDDAAVQARTLMVADGLTDEGSPWLAAHARA
Ga0272420_10084544F023762GAGVHSAGDRLLLLPALTAVRPATSKEPESHSRCAGRLHCARPCQDTYTPAIPAPRATPPRRALTPQERGRLGGQATLARYGTEHYSRIGAVGFARAEAGWGEYLLGKLASSYRPKFGCEPHLGRNAAGDKARDQARRATPTLGVCAWLGCTVPATERHHIDGWQVSADTCGLCAAHHNELERSYRDALRRHRPFARTQEPPTKRAIAIGAGVGLDDAIPF
Ga0272420_10084547F041515AGGAGMGMNQMIVLQSGRDTHDAPEALAAPQPSPMDAAPTTLFEVIDRAVSAVLGQFDRWCDLDEREGESDAHFEAYVRWRVAIIDDAAAQARTLMVADGLAAEGSPWLAAHARA
Ga0272420_10084549F023762GGAGMVAQAQDTYTPAIPAPGGTPRALTPQERGRLGGQTTFARYRRDHYAAIGRVGFARAIEAGWGEYLLEKLAPSYRAKFGRNPVLGRNAAGDKARAQARRATPTLGVCAWLGCTAPATERHHVDGWQQSADTCGLCDAHHTELEHLWRAALRRHRPFARTQEPPTKRAIAISAGVGLDSAIP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.