NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1008742

Scaffold Ga0272420_1008742


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1008742 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7448
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034417Metagenome174Y
F042663Metagenome157Y
F058564Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100874210F034417GGAGGMPYTIVKPRDAWMQQATDAWAALEPQAPQGAQLRALAAIDRDNVALLIEALAALTSGQVSQELQDLAGLRPVGEILGMPDRDDDDVEDW
Ga0272420_100874211F058564AGGAGMTPIGYTLHGHPFCLPCVEGDYHLNADGLAHAHDGQGCAADVAPIYAGDPDDGAPCAGCGHPLATPPEAAIVWTCPECGSDDLRTFYSERRTCRVGTRDDTGDGADAAPWPSYEGDEFVDIDPTTFAFACDTCTTYDITPHTGGETDALHHRQAA
Ga0272420_100874213F042663AGGAMTSQIIPATHVAASIPSIPPYPRPAGALDDGDVSVTTTFRPCSPIGSTEVVTSLDALDDTALLALLDVTISRLTAYRAAYQHAMTEDTAPAPVRAPRPLPVPWHAW
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