NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1008913

Scaffold Ga0272420_1008913


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1008913 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7349
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008598Metagenome330Y
F042663Metagenome157Y
F074201Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10089131F042663AGGAMTIHAIPATHLAASIPSIPPHSALALDDGDVSVTVTFRPLDPIGATEVVASLALPDATALLTLLDATITRLITYRDAYRQAMTENDQPGRDEDANPAPLRAPLPLSIPWHAW
Ga0272420_100891316F008598AGGTGGMTGATDKAVPAHVALITDRITVDAADALADALHAVGVTVERRTFLPTRDDIVHPWGVLLVDVDGPPATLARLVVPATAPAGVAPALAAALGVGQRPAPATLQLKADGVFVSVRGRDILDIITALNGLPAQLTRLDTRREERRLVYSEGAWRIDP
Ga0272420_10089136F074201AGGAGMDIVDIRLTATACRQIARLFRAQKADAETLAVRAAQALDVLDATDDDALAPWGRTLLVAAFEALYEDEHARVRHMDEGLGALGPYANDTEGFDDAS
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