NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1010443

Scaffold Ga0272420_1010443


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1010443 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6650
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011463Metagenome290Y
F028367Metagenome191Y
F033266Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10104432F011463N/ALKKTKQIIKAQINKHRXDVIYEVNDXVXLFFRNIKTTRSCKNLKDKQLEFYQITVKVEIFYHLHLSISMKQQHSMFSSKLLXSYFEDSLSEQHLKSSKLLTIENDDHXKINDILNSKCYQDXIQYKIKXTKLDXNDEXYYVDKEEFESSKEVLVEFHKLYSDKSY
Ga0272420_10104435F028367GAGLCKLDEILLKENYFEKSFLIDAHLISQNQSFSLRSLINSDSIVYTIIHSNLVNKVCEKLKIQSISLAKEKLIRDYDEKIFKKTITHKILFNLIIESHKKLTVSMLITDINHHEVILNKLXMNKNEILLNIQNDVIVFSNQLNTSISIFSILFNSKHSS
Ga0272420_10104436F033266N/AMFSRSSTEKRFEEFXNHFSQISDADSLKSRTKSSSAASFIHEDDESFAETIISLVFYEIXKAQSLALNKETDQLYELNKQQEDEIKELKTRLQAKENTSFDFIYSERSRSQKIPDSSLFTDEKNSTXKNXYGKIQNKLEINVDLFSNE
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