NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1011624

Scaffold Ga0272420_1011624


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1011624 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6224
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F057011Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10116242F057011N/AVLXSNFKNQCIRRXXIXLIYIELXVRFXFKKLVISFKVIEEIKIISLCSQIEVLLKENYFEKSFLINASLISQSNSFSLRSLIDSDFVVYTLIHDKLVNKIYQKLEIQSILLAKEKLIRDYDKKLARKTITHKILLNLTIESHKELTMSMLIIDIKHHEAILSKLXMNKNEILLNMRHDTIVFSD
Ga0272420_10116244F002432N/AMQNDXAKXLLMMKFSENFNIFLIISMTSFYFNKSFHSRMSFDSDTTYYETTYERLEARKADDIVIXMKELLIFDRQQLEKTKQIIEAQINKHRRDVIYEVDDXVXLFSRNIKTIKSCKNLKDKQLKLYQITVKVEIFYHLHLSISMKQLHLMFSSKLLXSYFKDSLSEQHLKSSKSLTIKNDNH
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