NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272420_1011764

Scaffold Ga0272420_1011764


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1011764 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6169
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008598Metagenome330Y
F034417Metagenome174Y
F042663Metagenome157Y
F058564Metagenome134Y
F074201Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10117641F008598GAGMAYLHADDTTDGATPTHVTLTTDHATAGDVGPFADALHAAGVMVERHAFLPVRGEEQHPWGVLLLAVSGPPLPLARLVVPATAPPGFAPALAAALGMGVRPAPATLQLKADGVFVSIRGQDIIDITHALKGLPAQFARLNTRREERRLVYSEGSWRIDP
Ga0272420_101176411F042663AGGAMTTQAIPAPHVAVSIPSIPPRTAVALDDGDVSVTATFRPHDPIGATEVSASIDLPDDTTLLNLLDTTIARLTAYRDAYQQAMTANDQPARDEDADPAPVRAPLPLPVPWYAW
Ga0272420_10117647F074201AGGAGGMDTVDITPTPEACRQIARLFRARQADAEALAARAAQALDALDALDTTDDDALAPWGRDLLTVAFAALYKAEGARVSKMREGLEALDPYADNGKGSDDAP
Ga0272420_10117648F034417AGGGGGMAWAISKPRDAWMRQAKDAWAALEPQAPHSSALRALAAIDQHTFALLIEALAALTPGQVSQELQDLAGLRPVGEVLDMPDLGDTERDADAGDIRNW
Ga0272420_10117649F058564AGGAGGMTTMTPAPTPEWHEIATDGMAHAHDGQGRAADITPIPAGDLDDSAPCADCGQSLAAPADASIVWTCPYCGSADLRVLYDERRACRVTTLNDTGDPADAAPWPSYAGDEFVDIDPGSFAFHCDACNTHDITPHKGGQTNGLGHQQAA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.