NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1012713

Scaffold Ga0272420_1012713


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1012713 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5866
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F066295Metagenome126Y
F081945Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10127131F081945N/AMSSYSFTEEHFKEFRNHFSQISDADSLKSRTKSSSAASFIHEDDELFAETIILFMFYEI
Ga0272420_10127132F066295N/AMFYEIXKTXSLALDEETDQLYELDKQQEDKIKKLKTRLQAKEITSSDSIYSERSRSQKIPDSSLFTDEKNSTXKNXYRKIQNKLEINVDLFSNEXVKLSYIHSRLFDDAAEITQARCKRDCVNLYRIVDDLLKELAQLFNDSNKKVNFRRKYYNLIQEFKKFSEFYTQFQHLSFYLDYHE
Ga0272420_10127135F002432N/AMXKSLCKRLRITASLFTVYHSEIDDQSKRVNQNVERELRIYCNYMQNDXVKXISMMKFSDNFNIFLITSMILFYFNKEFHSXMSFNSDMTNYKTTHERLEARKADDIVIQMKELLNFDHQQLKKTKLIIEVQINKHRRNIIYEVDDXVXLSFRNVKTTRLRKDLKDKQLDLYQITVKVSIFYHLHLSVSMKYLHSMFSSKLLQLYSEDFLSKQHLESLKSITIKDDEHXEINDILNFRCYRDRIQYKVKXTDLDRNDEXYYVDKEKFDDSEKVLNEFHKLYSNKSR
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