NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1014061

Scaffold Ga0272420_1014061


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1014061 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5508
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009580Metagenome315Y
F021216Metagenome219Y
F038008Metagenome166Y
F065269Metagenome127Y
F074204Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10140614F065269N/AMTRSTESESVSIARYKLQNARRESLLSQNRTASKEEDMNVLLNTEEENMNALLFNHEMIKISISTELNA
Ga0272420_10140615F074204N/AMIVFCILHQVQSRVLAFALIDNEVSTYVFMNKFFAQQHYFFLHQLTHSCRLQEFDDQVTLINDIIHVVEITMILDEYIKMLRACISVTSD
Ga0272420_10140616F009580N/AMKRLKLVDKMICIQISERDLAQKLNFSCRQXDFFIYIDDITVVNVHDIQSEKLLIXAFFNNFAQMLQFAVVAQLSLVADFLDLRNDQNLILNDDNDKA
Ga0272420_10140618F021216N/AMKSRMKSNAMKKEHHELEKALKNHERSNDDHSNDILNEHTESISSCDVIKESDERKRK
Ga0272420_10140619F038008N/AXSESSRIVIVANKKMSISQHHLDTFTLKQRVYLNDSDNKENFTTTAMKINXKLNKRLKELTLIITHHEELKELIARMKHLADVMTKNXKCHEKIYKVYSDSQTSLKTVKVMISTKDQTRLQXVQIMHESIQS
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