NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1015367

Scaffold Ga0272420_1015367


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1015367 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5198
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021026Metagenome220Y
F038009Metagenome166Y
F061399Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10153672F061399N/AMNYVDSLSLSIFMSITYKYILIFVNHLIKMKHLVLITFMKVEETINCFYVHVXKHHDLLKFFMSDRDTQFIFDVXKHMCKMLKIDVKLSTMYHFEINDQIERINAVMKHYLRVFINYMQNDXAKXLSEVKFIVNNASSLITLASFFLINLNQNLCLNFKFFEFLLKNFTFQAXDKLINVEEFIKKMKKLTEHLRDEMLITQIIYEFNVNLSHRSCFKYFVEDEVXLNACNFSIVHLAVKLYDHNVDLFKIKHVFKNNSLIIELNLSAFMKIHSIFHVILLNHIASDFLSSQRQKS
Ga0272420_10153674F038009GAGMIKVSSFQLDYVKLYRRSIELICLKDNRSSKEEIISTLDFXXVFFLNDLKNTIKSFLFQTRNKIERNLFLVNELSISXLFMSERKVILLLMSRXKTELLLASELRTELLLVSELKTKLLLSSEXETRLLFASKLKTELLLSSEXETRLLLASELSAELLLVNNL
Ga0272420_10153675F021026N/AMIVFCILRQAQFKVLAFALIDSKVFAYVFMNKFFTQQHHLFLHQLTHSCRLXEFNNQVALIDDIIHVVEITMILDEYIERLFFYVIELSQYFIIMNLSXLYHHVMNVNFEHNILILFFFFCLNHCCSSFIKIYDLNQQEENFSFKVNKVTFFQSHS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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