NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1015600

Scaffold Ga0272420_1015600


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1015600 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5140
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008598Metagenome330Y
F023762Metagenome208Y
F041515Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10156002F008598AGGTGGMADAYGDDMMGLAAAPTHVALTTDHVTADAAGPLTDVLRTKGVIVARHAFLPVRGEERHPWGVFLLAASGPPLPLARLIAPATAPADVVPALVAALGDGDRPAPATLQLKADGVFVSVRGRDLRDIIHALDGLPAQLAHLDTRRGERRLVYSEDAWRIDP
Ga0272420_10156006F041515AGGAGMSMSQMIVLQTRRDDAQEAQPAPQEPQPTPMSAAPTTLFEVIDQAVSAVLAQFDRWCDRDEREGEDETHFADYVRWRVALIDDAAVQARTLMTGNTLAAEGSRWRDAHGRA
Ga0272420_10156007F023762GGAGMVAQAQDTPTRAIPAPGGTPRPLTPQERGRLGGQATFARYGRTHYSKIGAVGFARALEAGWGEYLLGKLAPSYRAKFGRDPVLGRNTAGDTARAQARTATPTLGVCAWQGCAAPATERHHVDGWKVSADTCGLCDAHHAALERSYRAALRRHRPFARTQEPPTKRAIAMSAGVGLDAAIP
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