NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1019876

Scaffold Ga0272420_1019876


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1019876 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4361
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F009580Metagenome315Y
F021026Metagenome220Y
F021896Metagenome216Y
F048018Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10198762F001951N/AMIIMKLKFIDSSRNKKERNEDTVEMTVTEVIIFEFKELLINAEMFLTLMNKMMIKMKQD
Ga0272420_10198763F009580N/AMICIQISERDLAQKLNFFCRQRDFFIYINDITVVNVHDMQSEELLIXTFFSNFVQMLQLAVVTQLSLVADFLDLRNNQSLILNNDNNET
Ga0272420_10198764F021026N/AMIVFCILRQAQSKVFILALIDNEIFAYVFMNKFFAQQHHFFLHQLTHSCRLXEFDDQVTLIDDIIHVVEITMILDEHIERLFFYVIELNQYFIIMNLSXLYHHVIDLNFEHNILILFFFFCLNHYCSFLVKIYDFNQQEENFLFEVNKVAFFQSCFQFTHKKQFSSRIARKK
Ga0272420_10198766F021896N/AMMKNNLENEDFLKNVECNLTFLKSDKEYIFSDETSEQDNYSTIVINESSIEVRKI
Ga0272420_10198768F048018N/ASXMIXRRSLSELSMYFLSXKYRXFSCFSHSTKEILLXCHASLQSTSIIXAANLSLILICFHNVXVRMSAKSSSRFRMSXSNXDLMFSTSNSSISRFMKVRICKNAEIIENRCNXTESKVMICDXSFMTLMLKTLKTRFLLISKFKTXVFRIVXCXYXYXESNVFFSLERSSEXRVKAFNLSLILLKX
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