NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1026909

Scaffold Ga0272420_1026909


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1026909 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3502
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F008735Metagenome328Y
F009580Metagenome315Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10269092F008735N/AVSLLIYDESXLDINDLDSMREVMIIIHVHALYQTLLSCIQLIFVSLIFKYVEKLLESRSNKNSDRICREMNNKKRLIVQDLCNDLSYYCKRLRIQFYINXRTKNDEQEXNDDIMLLNLILKFLHYTKDLDXIFNHTLSELFDSTLIINXEIVKXLYLSERVTRRDFNVEKRCRKCKSFIMSKTELN
Ga0272420_10269093F001951N/AMIIMKFRFIDSSKDEKEKNEDIVETTVTEMMIFELKELLVNAKTFLTLTNEMMMKMKQD
Ga0272420_10269094F009580N/AMICIQISECNLAQKLNFSYEQQNFFIYTDNIIVINVYDMQSEKLLIXAFFSNFAQMLQLAIITQLSLVADFLDLRNDQNLILNDDNNEV
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