NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1040671

Scaffold Ga0272420_1040671


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1040671 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2481
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008668Metagenome329Y
F037509Metagenome167Y
F048017Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10406711F037509N/AMILISIFIQIHSIDNETSIKKFVYLMINDIERQNNIKKSIESTRTYDHVIARESIAQSVAVRTVPR
Ga0272420_10406713F008668N/AMILFYFNKEFHSRMSFDSDTTDYETTRERLEARKADDIVIRMKELLNFGRQQLKKTKLIIEVQINKHRRDVIYEVDD
Ga0272420_10406714F048017N/AMKNKQLSRRQVNYLNILSKFNFQIIFRSGKMNTKVDALTRMLLANVSEPAQRLEDRFQTILTLDRVDVLSIESEANLYQRVRMINQTDELCSEYRQAMNENKLKFHTTKLKNCEIIDGVLFRKGLL
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