NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1072267

Scaffold Ga0272420_1072267


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1072267 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1370
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F009580Metagenome315Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10722671F008735N/AVSLLIYDESXLSIDDLDSMREIMIIVHVHALYQTLLSCIQLIFVFLILRYVEKLLESRSDDDSDRICRKMNDEERLIVQDLCNDLSYHRKKLRIQLYINXRTENDEXEXDDDIMLSNLILKLLHCAKDLDXIFDHTLSELFDSMLIVDRKIVRXLHLSERITRR
Ga0272420_10722673F009580AGCAGMIEVKVRRLRLVDKMICIQIFERDLAQRLNFSRRQRDFFIYTDDITVVDVHDTQSEELLIXAFFSNFARMLQLAVVAQLSLIADFLDLRNDQNLILNDDNDET
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