NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302193_10256646

Scaffold Ga0302193_10256646


Overview

Basic Information
Taxon OID3300030519 Open in IMG/M
Scaffold IDGa0302193_10256646 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)942
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000758Metagenome / Metatranscriptome903Y
F010440Metagenome303Y

Sequences

Protein IDFamilyRBSSequence
Ga0302193_102566461F010440N/ARNLASSEISPAQREKREAQMARCNRIIQRARQQAHRSLASFAGTLLDMIDDTVFDQNQNSAIITAAHLIRSASIEQLAVAVPAAIRETPTCDTRLKRVKCPEFTETVVCLLSLDKITFSCERNIAIRTALHLSNIVGRHQIYRSVRRAKADTGELGPKCMANHPKNSGSSPRGSGSKKIAAIRAPSTA
Ga0302193_102566463F000758N/AMLYNTSQKGGDMTTPKKTAIRPKRRIVAPLEKRTQLRLTIDSRFTKAHFNQLFAALGIRKKNALAEHIIMNFKTKVA

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