Scaffold Ga0307512_10000154

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307512_10000154

Scaffold Ga0307512_10000154

Overview

Basic Information
Taxon OID	3300030522 Open in IMG/M
Scaffold ID	Ga0307512_10000154 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	91239
Total Scaffold Genes	106 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (37.74%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Morchellaceae → Morchella	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	45.6996	Long. (^o)	-121.669	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026456	Metagenome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_1000015494	F026456	N/A	MLDDMDGVMXALGKRKTRWNEDLYFTVKFARQKLSKYYAEVTPTTGLLHISAHILDHFRKLRSSTKQDKGIENHPEDKTFYTTKYQEAFLKYFEHE

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