NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307512_10003127

Scaffold Ga0307512_10003127


Overview

Basic Information
Taxon OID3300030522 Open in IMG/M
Scaffold IDGa0307512_10003127 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19728
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (79.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.6996Long. (o)-121.669Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008531Metagenome332Y
F010438Metagenome303Y
F060560Metagenome132Y
F081959Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0307512_1000312713F010438GGAGMWNRLQFMSSSDLQTVSYATRRISKALAEDPDRQIIETYWNTVIQQNNIWSIAFEARTKEILKEIC
Ga0307512_1000312714F060560N/AMITCTSLRHVLLEWHKNKGFHPAASKSKLKVDRHERANYFNCKNDHGKIASCCALTGRKLLTPGGVTDTYTFWLNTWNTLPDCYQPRVYNITLATVKHQIQQAVNPTPAMVISVEAARFDYAILLDILTSQVALKEPEIGSTDPNIPIHNNCMDDEMHFGMPGGSGNFTDEGDESDAIPTASR
Ga0307512_1000312715F081959GGAMLTRRKARMAMIQMRMRREKHRKPMMDQLRMWRTEGIVLESVKIGQYISDM
Ga0307512_1000312723F008531AGGAMAQVIELTLGAFMSSLGVKGGTEVWEAHECEQQFRENESIEVGKSQRHRKEGNARINKVSAMRSGLAKIIETVRIS
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