NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272436_1000023

Scaffold Ga0272436_1000023


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1000023 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)350223
Total Scaffold Genes391 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)205 (52.43%)
Novel Protein Genes19 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (5.26%)
Associated Families16

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F006206Metagenome378Y
F007840Metagenome343Y
F013598Metagenome269Y
F017941Metagenome237Y
F018839Metagenome232Y
F025887Metagenome199Y
F032102Metagenome180Y
F037508Metagenome167Y
F041516Metagenome159Y
F048019Metagenome148Y
F059497Metagenome133Y
F065269Metagenome127Y
F079402Metagenome115Y
F084912Metagenome111N
F102179Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_1000023304F007840N/AMINAIERQNNTREFIESTARLIELLDDLQLIKYTSFISINRISDKEPSLIARESNRSRESINSQIKQQK
Ga0272436_1000023307F084912N/AMTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALDDKFDHSLNFDSESDSKN
Ga0272436_1000023309F059497GAGMSIKDIDRKIVYNTQCELNVLDVAFIDASAQNLEDIKVKLSSKYQNFLDVFDRAQVNKLSPHRSYDHKIEFTNDVTSSRCRAY
Ga0272436_1000023314F018839N/AVKVVTFNHLTSDLYAAVFIIAMFIESKYKAKLIELDDFMILLKKDDFSLS
Ga0272436_1000023320F079402N/AMNKNHFSIEEIKIAYVKSRVSETMIKHIALRMRNTITNSFLEAEEILSIINKIYNDLNQRHTTQRQFLKLYQNKIFFHEF
Ga0272436_1000023321F025887N/AMPDDSFDFKSFTVDVILSSLEKIFRSLALINTEVTDMTFIDESLMSELCERFDIQSISLSKSKSI
Ga0272436_1000023329F018839N/AMMIAKVVTFNHLTSDLYAAVSIIAMFIELKDEAKLIELDDFMILLNEDDFSLSRVTTEEINLFNI
Ga0272436_1000023332F037508N/AVIFRLEDDADQQIYAKHHVDAFSLYQSLSELLKHLKEIYEDQNLIRKCHHEYVTLKQLNKFFSFFYSEFTRIFSFLNYDNIILMNNIQNKINNHFQNVLSVYLIEFSSLNKLKIFFQDVNNKQ
Ga0272436_1000023334F017941N/AMKIADLEKNIDESIYKQILETNEIDENCMLLREAIARDEAEYKDTKLRNC
Ga0272436_1000023338F000597N/AMKEMLISSMMSMSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDNHYAKKLITHVIYLNLTVQDHTIDTVSMLITRLDQHQMIFEKT
Ga0272436_1000023342F032102N/AMKIADLKKNISESIYKQILETNENCTLLREAIARNEAQYEDIKLKNCRIQNEILYKDSQL
Ga0272436_1000023343F013598N/AMNFIIDLFDSSEYNAILTIICRLSKKRHYISCITDDEDITIEKTAEMLIQ
Ga0272436_1000023346F006206N/AVKIISLCNLDEILSKENYFDKLFLVDALLILQNKSFSLRSLIDSDSAVYMIIHINLVDRVCKELRIQFISLTKEKLIKKYDEKISKKTITHKILLNLIIESHKKLTVSMLIADINHYEVILEKS
Ga0272436_1000023353F065269N/AMINVQSNLDQQFSTHTMIKSTELESESMSIAHYELQDAERKSLLSQNQTALEEENMNASLNTEEKNMNTLFFNHKMIKISINIELNA
Ga0272436_1000023356F013598N/AMNFITDLFDSSEYNIILMIICRLSKKRHYISCIIDDENITVKKTAEMLIQ
Ga0272436_1000023358F018839N/AMMIAKVVTFNHLTSDLYAAVSIIAMFIELKDEAKLIELDDFIILLNEDDFSLS
Ga0272436_1000023383F102179N/AMINNVEKTFVHNVSENTSTCSAMHVRSMLLRVMTLAMQEMHLDEVHFLRNKISQLESTTSKSTDVETLTYKDHNVAEKQLNSVAETVDCKQLISHAIVRVLIIHETTYNFSSKFVVELIKILQQEDEFAVRLKADKTKSI
Ga0272436_1000023386F048019N/AVNEHVFELFFAQAFAKALQDESTVYALVIINVVKELIIEHQVKAMNNVTSCITNTFEAQTLLIELKEYEDVFSTENADKLSLHEDHDHAIEITAKSLYESLYNLLNTELAILK
Ga0272436_1000023388F041516N/AMIQRIIHIHEAYNLSLRDHKIIHEKENISNIEKMLHMSRKSILVEDFNLHHFT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.