Scaffold Ga0272436

Basic Information
Taxon OID	3300030523 Open in IMG/M
Scaffold ID	Ga0272436_1000031 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300030523 Open in IMG/M

Scaffold ID

Ga0272436_1000031 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	327961
Total Scaffold Genes	378 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	194 (51.32%)
Novel Protein Genes	17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (23.53%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

327961

Total Scaffold Genes

378 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

194 (51.32%)

Novel Protein Genes

17 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (23.53%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.9	Long. (^o)	159.8	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.9

Long. (^o)

159.8

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F008668	Metagenome	329	Y
F017941	Metagenome	237	Y
F018839	Metagenome	232	Y
F025887	Metagenome	199	Y
F036036	Metagenome	170	Y
F037508	Metagenome	167	Y
F048019	Metagenome	148	Y
F065269	Metagenome	127	Y
F069514	Metagenome	123	Y
F094626	Metagenome	105	Y
F102179	Metagenome	101	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_1000031135	F018839	N/A	MMIAKVVTFNHLTSDLYAAVFIITMFIESKGKDLTELNNFMILLNEDDFSLS
Ga0272436_1000031146	F069514	GAG	MIKFVDNNALFSIIFSISFFLNKNFHSCMSFELNVIEYESSHERLQTAKVENISEHMNKTLKFARKSLVKT
Ga0272436_1000031147	F094626	N/A	MMKQVNKHRKEVDYKIESKMFLNERNIITARFFKKLNDKMLDSFINLNLVDSSYKLKLSESMHIYDVFHSDLLCSVADDFLPNQKNEFSDSIVINDEDE
Ga0272436_1000031151	F048019	N/A	VNEHIFELFFAQAFAKVLQDESTVYALIMINVVEESIIEHQVKAMNNAMNRITNAFKAQTLLVELKEYKDVFSTENADKLSLHEDHDHAIEITAKSSYESLYNLLNTELVILKQYLDDVLVKE
Ga0272436_1000031153	F102179	N/A	VINDVEKMFIHSVSENTSTCSAMHVRSMLLRIIILAMQEMHLDEVHFSRDRIFQFKSTTSKSTDVETSTHRDCNVAEKQLNSVAETVDCKQLVSHAIVRVLTIYETTYNFSSKFIVKLIKILQQEDEFAVRLRADETMSIQKSDIKA
Ga0272436_1000031163	F037508	N/A	VIFRLEDDADQQIYAKHYVDTFSFYQSLSELLKHLKEIYKDQNLIQKYHHEYVTLKQLNKFFSSFYSEFTRIFSFLNYDDIILMNNIQNKINNHLQNALSVYLIKFNSLDKLKIFL
Ga0272436_1000031165	F000597	GAG	VTFIKDAMKDVLISLTISSSDNLFASKSLTIECVLFSNEINYSLKSLIDIKAADYSFIDEVITQIVYDQLQIEFLTLIKAKSIQEFNDHYVKKLITHVIYLNLTVQDHTIDTAFMLIIQLNQHQMIFEKT
Ga0272436_1000031166	F018839	N/A	MMIAKVVTFDHLTSDLYAAVFIIAMFIELKDEAKLTELNDFTILLNEDDFSLS
Ga0272436_1000031168	F001253	GAG	VTFIKDVMKDVLISSTMSSSNDFFASKSLTIECVLSSNKISYSLKLLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHAIYLNLTVQDYMKRFVFMLIT
Ga0272436_1000031170	F018839	N/A	MMIAKVVTFNHLTSDLYAAVFIIAMFIELKDEAKLIKLDDFTILLNEDDFSLSQVTTEEIDLFSI
Ga0272436_1000031178	F065269	N/A	MIKSTELESESVSTACYKLQNVEKESLLSQNQTASEEEDMNTSLNIKEENMNTLLFNHEMIKISISTELNA
Ga0272436_1000031180	F008668	N/A	MSFNSNTTDYKITCKCLEARKVNDIIIQMKEFLIFDHQQLKKTKQIIKVQINKHK
Ga0272436_1000031191	F025887	N/A	MSDDSFDFKSFIVDVILSSLEKIFKSFTLINTEVIDMTFIDESLMSELCECFNIQSISLSKSKLI
Ga0272436_1000031194	F065269	N/A	MIRSTESESMSIAHYDFQNVRRESLLSQNQTASEEEDMNVSSDTEEKNMNILFFDHEMIKISISTELNA
Ga0272436_1000031206	F036036	N/A	MLVSLIHHLFSCFDQSFMSEDQCLVHLFRYILDLIDLQAFASAFILDDVRVEAHTRMKTLVHKEENQEDD
Ga0272436_1000031207	F017941	N/A	MKIADLKKNIKKSIYKQILEINEIDESCTLLHEAIARDETQYEDIKLKNC
Ga0272436_1000031211	F001253	GAG	VTFIKDVMKDVLISSTMSSSNDFFASKSLTIECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIKSLSLIKLKSIRKFNDHYAKKLIIHAIYLNLTVQDHMKRFIFMLIT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272436_1000031

Overview

Ecosystem & Geography

Associated Families

Sequences