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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030523 Open in IMG/M |
| Scaffold ID | Ga0272436_1000034 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 320206 |
| Total Scaffold Genes | 372 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 199 (53.49%) |
| Novel Protein Genes | 13 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (7.69%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.9 | Long. (o) | 159.8 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001253 | Metagenome | 736 | Y |
| F013598 | Metagenome | 269 | Y |
| F017941 | Metagenome | 237 | Y |
| F025887 | Metagenome | 199 | Y |
| F036036 | Metagenome | 170 | Y |
| F037508 | Metagenome | 167 | Y |
| F061402 | Metagenome | 131 | Y |
| F079402 | Metagenome | 115 | Y |
| F094626 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272436_1000034282 | F013598 | N/A | MNFIIDLSDSYDYNAILTVICKLLKERHYISCITDDEDITVEKTAEMLLQ |
| Ga0272436_1000034287 | F001253 | N/A | MMKDVLISSTMSSLNDLFVLKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHAIYLNLTVQDYMKRFVFMLIT |
| Ga0272436_1000034288 | F037508 | N/A | VIFRLEDDADQQIYAKHHVDAFSLYQSLSELLKHLKEIYEDQNLIRKCHREYVALKQLNKSFSSFYLKFTKIFSFLNYNDIILMNDIQNKINNHLQNALSVCLIKFSSLDKLKIFLQDVNNKQQVNYQLRDEQ |
| Ga0272436_1000034319 | F061402 | N/A | MIEFIDNNAISLSIEQLMFFLNKNFHSHMNFNLNSIEYEITQARIEADKAKNIFKHMK |
| Ga0272436_1000034326 | F025887 | N/A | VTESDILIFCFISISDDLFDFKSFTVDIILNSLEKIFRFFALINTEVTDMTFIDESLMSELCECFDIQLILLSKSKLI |
| Ga0272436_1000034338 | F079402 | N/A | MQNKLKMNKNHFSIEEMKIAYVKSQVSETMIKHISLRMKNMITNSFLEAEEILSIINKMYDDFN |
| Ga0272436_1000034346 | F061402 | N/A | MTEFINNNAISSLIEQLTFFLNKNFHSCMSFDLNSIEYEITQAKIEASKAKNIFKHIK |
| Ga0272436_1000034347 | F001253 | GAG | VTFIKDVMKNVLISSTMSSSDDFFASKSLTIECVLSNNEISYSLKSLIDIKAVDYLFIDELTAQNVYDHLQIESLSLIKLKSIRKFNNHYAKKFITHAIYLNITV |
| Ga0272436_1000034351 | F017941 | N/A | MKIADLKKNISESIYKQILEINEINENCTLLREAITKDETQYEDIKLKNC |
| Ga0272436_1000034352 | F013598 | N/A | MNFIINLFDSYNYNVILTIICRLLKERHYISCIINDEDITIKKTAEMLIQ |
| Ga0272436_1000034353 | F036036 | N/A | MFISLIHHLFSCFDQSFTSENQYLVHLFRYILDSIDLQAFASAFMLNDVRIKAHTRVKALVHEEED |
| Ga0272436_1000034354 | F094626 | N/A | MFLNERNIIAARFFKKLNDKMLDSFINLDFIDSSYKLKLSEFMHVHDVFHSDLLHSVVDNLLSDQKNELSDSIVINDILNFR |
| Ga0272436_1000034358 | F025887 | N/A | VTENDILIFCFISMFDDSFNFKLFIVNVILSSLKKIFRFFILINIEVIDMTFIDESLMSKLCERFNIQSILLLKLKLI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |