NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1000036

Scaffold Ga0272436_1000036


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1000036 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)305016
Total Scaffold Genes333 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)145 (43.54%)
Novel Protein Genes29 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (17.24%)
Associated Families17

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F001253Metagenome736Y
F003820Metagenome466Y
F006206Metagenome378Y
F007840Metagenome343Y
F008668Metagenome329Y
F013598Metagenome269Y
F017941Metagenome237Y
F018839Metagenome232Y
F036036Metagenome170Y
F037508Metagenome167Y
F048019Metagenome148Y
F059497Metagenome133Y
F084912Metagenome111N
F094626Metagenome105Y
F102179Metagenome101Y
F104131Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_1000036100F000597N/AMMKKMLISSIMSMSDDSFASESLTTECVLSNNEISYSLKSLIDIEVADYSFINEVITQIVYDQLQIEFLTLIKAKSIQEFDNHYAKKLITHVIYLNLTV
Ga0272436_1000036102F036036N/AMLINLIHHLFLCFDQSFASENQCLIHVIEYIFDLSDLQMFASAFILNDVRVKAHMRMKVLVHEEENQEDD
Ga0272436_1000036104F013598N/AMNFIVDLFDLYNYNVILTVICRLLKERHYISCIINDEDITVEKTAEMLL
Ga0272436_1000036109F000597N/AMSNDSFSSESLTTEYVLSSNEISYSLKSLIDIKAADYSFINEVIAQIVCDQLQIELLTLIKAKSIREFDDYYAKKLITYVIYLNLTVQDYMIDTASMLIT
Ga0272436_1000036113F001253GAGGVTFIKDAMKDVLISSTTSSLDDLFVLKSLTTECVLSSDEISYSLKSLIDTEAADYSFIDELIAQNVCDHLKIKSLSLIKLKSIRKFDDHYAKKLITYAIYSNLTVQDYMKRFIFMLIT
Ga0272436_1000036114F018839N/AMMIAKVVTFNRLTSNLYAAVSIIAMFIESKDEAKLTELDDFMILLNEDDFSLSRVTTEEINLFSI
Ga0272436_1000036120F017941N/AMKIADLKKNISESIYKQIFKTNEINENCTLLREAIARDEI
Ga0272436_1000036121F013598N/AMNFIINLFNSYNYNTILTVICKLLKERHYIFCIIDDENITVEKTAEMLLQ
Ga0272436_1000036122F036036N/ALIHHLFLCFDQSFASKDQFLIHVIEYIFNSSDLQTFASAFILNDVRVKAHMRMKVLVHEKENQEDD
Ga0272436_1000036124F037508N/AVIFRLEDDADQQIYAKYHVDAFSFYQSLSELLKHLKEIYEDQNLIQKCHHEYVALKQLNKLFNSFYSEFTKIFSFLNYDDITLMNDIQNKINNHLQNALSVCFIKFNSLNKLKIFLQDINNKQQVNY
Ga0272436_1000036125F000597GAGVTFIKDVMKDMLISSTISSSDDLFASKSLTTECVLFSNEISYSLKSLIDIEAADHSFIDELIAQNFCDYLQIESLSLIKLKSIREFNNHYAKKLITHAIYLNLTVQDHMIDTTSMLIIQLNQHQMILEKT
Ga0272436_1000036126F018839AGTAGLTSDLYAAISIIAMFIESKDEAKLTELDDFTILLNEDDFSLSQVITEEINLFSI
Ga0272436_1000036128F017941N/AMKIADLKKNINESIYKQILETNEINENCTLLREVVLKDEAQYEDIKLKDC
Ga0272436_1000036129F094626N/AMFLNERNIVTARSFKKLNDKMLDFFINLNLVNSSYKLKLLETMHIHDLFHSDLLHLVVNDFLSDQKNELFKSIVINDENK
Ga0272436_1000036131F017941N/AMKIADLEKNVSKSIYKQVLDVNEIDENCTLLREAIERDESQCKDIKLKNC
Ga0272436_1000036133F036036N/AMLISLIHHLFSCFDQSFTSEDQSLVHLFRYILDSIDLQAFANAFILNDVRIEAHTRMKALVYEEESQEDD
Ga0272436_1000036134F013598N/AMNFIINLFDSYNYNAILTVICILSKERHYILCITDDEDITAEKTAEMLIQ
Ga0272436_1000036137F000597N/AMKEMLISSTISMSDDSFASESLITEYVLSSNEISYSLKLLIDIEAADYSFIDEVITQIVCDQLQIKSLTLIKAKSIREFDNHYAKKLITHVMYLNLTVQDHMIDTASMLITQLNQHQMILEKT
Ga0272436_1000036138F003820N/AMNDLQNKINNRLQNTLSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIVKVIVIPDKCAATSLSVMTLIIDYVKSTFSFIFESARLSIICYTCKISSHLFKNCSQNKINISTSCAFISRLHEIVISKNSEAKN
Ga0272436_1000036142F018839N/AMIMKVVTFNHLTSDLYAAVSIIAMFIELKDEAKLTELNDFTILLNEDDFSLSQVTTEEINLFSI
Ga0272436_1000036144F001253GAGVTFIKDVMKDVLISSTMSSSNDLFASKSLTIECILSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIELLSLIKLKSIREFDDNYAKKLITHAIYLNLTVQDHMKRFVFMLITRL
Ga0272436_1000036163F059497N/AMFVEDIDREIIYNTQCKLDVIDIFSVNETTQNLEDIKVKLSLKYQNFLDVFDRAQADKLSSHHLYDHKIELTSDAMSSCC
Ga0272436_1000036167F006206N/AVKIISLCNLDKILLKENYFDKLFLVNALLILQNESFSLRSLIDSDSVVYMIIHINLVNRVCKELKIQSISLTKEKLIKEYDEKIFKKTITHKILLNLIIKSHKKLTVSMLIADINHHKVILEKS
Ga0272436_1000036171F008668N/AMSFDSDTTDYEITCERIKARKADDIVIQMKELLNFNHQQLKKTKLIIEAQINKHR
Ga0272436_1000036176F084912N/AMKMIDQSQSRDAVLTSVKENDLLIENCFLCHKSDHTSKKCLNRSFRINALNDEFDHSLNFNSEFDSKN
Ga0272436_1000036177F104131N/AMSHFFKERFKASFFIVKDNNSFAEIITSSMTMKALKKRCEELKARLQAREIISSSSIYSERSRSQKILDSSLFTDEKNSI
Ga0272436_1000036178F007840N/AMIDAIERQNNTRKFIKLTARLIELLDDLQLIKYASFTLINRISNKESSLIARELNRSRELINSQIKQQK
Ga0272436_1000036224F048019N/AVNEHIFELFFAQAFAKALQDEFTVYALVMINVIEKLIVEHQVKAMNNIMSCITNALEAQTLLVELKEYEDVFLTENADKLSLHEDHNHAIKITAKSLYELLYNLSNTKLATLRQYLDDVLAKE
Ga0272436_1000036226F102179GAGMFIHSISENTSTSSAMHVKSMLLRIMTLAMQEMHLDEVHFLRDKIFQFESTISKSTDVKMLIHKDCSIAEKQLNSVAKTVDCKQLISHAIVKVLTIHEMIYNFNSKFIVKLIKILQQENEFAVRLKADETMNI

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